PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60165.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 391aa MW: 42360.1 Da PI: 7.4452

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	201	255	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++ LAk+l+L +rqV vWFqNrRa+ k PHT60165.1 201 RKKLRLSKEQSAYLEESFKEHHTLNPKQKQALAKQLNLRQRQVEVWFQNRRARTK 255 778899***********************************************98 PP
2	HD-ZIP_I/II	123.6	9.3e-40	201	291	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PHT60165.1 201 RKKLRLSKEQSAYLEESFKEHHTLNPKQKQALAKQLNLRQRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 291 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MELGLTLGDA NTVATTTTTT TTTTSFLSKK NVCDDHEKKK GLGFCMALGI NSSSSGKILQ 60 QDEENEEENT SEEGTNNGTV PVQLDLLPLV PVPTPAPPLK SLHWSSDNGS SENGSSGNGG 120 LPAARGFDVN RLPAVGMEEV TSPNSVASSF RMEFGLFKNC VNIIGVGNKR SSDSAGGNDG 180 GDPERASSRA SDEDENGVNT RKKLRLSKEQ SAYLEESFKE HHTLNPKQKQ ALAKQLNLRQ 240 RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL HKELQELRAL KTSNPFYMQL 300 PATTLTMCPS CERVASTTTS APAAAAPPII ATGTTTTTTT TKAPSTTTTT TATNDNIPKA 360 IPFLNSRPRF FPFTTTTTNN NPSHSHQSAA S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MELGLTLGDA NTVATTTTTT TTTTSFLSKK NVCDDHEKKK GLGFCMALGI NSSSSGKILQ  60
QDEENEEENT SEEGTNNGTV PVQLDLLPLV PVPTPAPPLK SLHWSSDNGS SENGSSGNGG  120
LPAARGFDVN RLPAVGMEEV TSPNSVASSF RMEFGLFKNC VNIIGVGNKR SSDSAGGNDG  180
GDPERASSRA SDEDENGVNT RKKLRLSKEQ SAYLEESFKE HHTLNPKQKQ ALAKQLNLRQ  240
RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL HKELQELRAL KTSNPFYMQL  300
PATTLTMCPS CERVASTTTS APAAAAPPII ATGTTTTTTT TKAPSTTTTT TATNDNIPKA  360
IPFLNSRPRF FPFTTTTTNN NPSHSHQSAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	TRKKLRL
2	250	258	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-78	HD-ZIP family protein