PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60224.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 580aa MW: 65591.2 Da PI: 6.841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ PHT60224.1 266 VCLYYQK-GLCAYGNRCRYKHV 286 5999*.***********7 PP
2	zf-CCCH	24	7e-08	373	395	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+++Hg PHT60224.1 373 QSICS-FAAAGKCSRGEKCPYIHG 395 56899.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MQYLDSDFVT DSSGASRFYF HTFSLTFPSI GCGCNLQEQN ERLFYKLLID IVEELLPIVY 60 KLLIDIVEEL LPIVYTPTVG EAYQKYESIF KCPQDLSTSL KEKYDSRGLR ILEVLKNWLE 120 TSIQVIIVTD GEKILGLGDL GCQFEDFANH NAFALLAKYR TTHLVFNDDI QGTTSVVLAG 180 IIPSLKLLEV HYAINILVPW CWRVCSYYFR LVLNAFTLCL SIPLNHVDIV PEMAVSVLCK 240 FFVHGACLKG EYCEFSHDWK DPPNNVCLYY QKGLCAYGNR CRYKHVKVSE QPTLPSSSAP 300 AQHLRSASPP TTLSPGMLAN DAGRLSGISS EYLASSGPFY PRNRPVWSEN SEHHDVEEID 360 SIVELKIINP SDQSICSFAA AGKCSRGEKC PYIHGDLCPI CAKHCLHPFR PQESGEHMKI 420 CEKRQKRLDL LKHSQEIECS VCLERVLSKT TAAERKFGIL FECDHPFCIS CIRNWRSGSP 480 SSGVDINSTF RTCPVCRKLS YFVIPSVIWY TTKEEKKDIL DGYKAKLRTI DCKHYDFGNG 540 TCPFGNSCFY KHQHRDGPPE EVVLRNLGHE DGSTVTAKNI

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MQYLDSDFVT DSSGASRFYF HTFSLTFPSI GCGCNLQEQN ERLFYKLLID IVEELLPIVY  60
KLLIDIVEEL LPIVYTPTVG EAYQKYESIF KCPQDLSTSL KEKYDSRGLR ILEVLKNWLE  120
TSIQVIIVTD GEKILGLGDL GCQFEDFANH NAFALLAKYR TTHLVFNDDI QGTTSVVLAG  180
IIPSLKLLEV HYAINILVPW CWRVCSYYFR LVLNAFTLCL SIPLNHVDIV PEMAVSVLCK  240
FFVHGACLKG EYCEFSHDWK DPPNNVCLYY QKGLCAYGNR CRYKHVKVSE QPTLPSSSAP  300
AQHLRSASPP TTLSPGMLAN DAGRLSGISS EYLASSGPFY PRNRPVWSEN SEHHDVEEID  360
SIVELKIINP SDQSICSFAA AGKCSRGEKC PYIHGDLCPI CAKHCLHPFR PQESGEHMKI  420
CEKRQKRLDL LKHSQEIECS VCLERVLSKT TAAERKFGIL FECDHPFCIS CIRNWRSGSP  480
SSGVDINSTF RTCPVCRKLS YFVIPSVIWY TTKEEKKDIL DGYKAKLRTI DCKHYDFGNG  540
TCPFGNSCFY KHQHRDGPPE EVVLRNLGHE DGSTVTAKNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-137	C3H family protein