PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60226.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 306aa MW: 34674.1 Da PI: 8.1752

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	146	165	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ PHT60226.1 146 FSCHLCYKTFNRYNNLQMHM 165 89*****************9 PP
2	zf-C2H2	15.9	3.8e-05	230	252	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ PHT60226.1 230 FMCRKCGKPFAVKGDWRTHEKNC 252 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MTEPYYNFFT GGWFNFLPLH QQYISSSNFC YNKEIAPPPP PPPSPPLREA LPLLNSNNYY 60 SCESSTTTFS HEENNNNNSN CNINENVSVS LHIGLPSSCE GVVDSGGGNK EDQFDVVMSN 120 NTTSSLIKGQ YWIPTPSQIL IGPTQFSCHL CYKTFNRYNN LQMHMWGHGS QYRKGPESLR 180 GTQPSAMLRL PCYCCAPGCK HNIDHPRARP LKDFRTLQTH YKRKHGAKPF MCRKCGKPFA 240 VKGDWRTHEK NCGKIWYCIC GSDFKHKRSL KDHIKSFGRG HGAVGVPNLE DLEEDSTSEI 300 EQDLIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein