PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60298.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 411aa MW: 46034.5 Da PI: 4.9014

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l +++ G g+W++ ++ g+ R++k+c++rw +yl PHT60298.1 14 RGRWTAEEDQILTNYILSNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	51.1	3.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ +++++++ lG++ W++Ia +++ gRt++++k++w+++l PHT60298.1 67 RGNITSQEENIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDQILTNYIL SNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TSQEENIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR 120 IPSDEKLPQA VVDLAKKGAL MPIKQSRKTS RISNMKKNKT SKNSNLAEPK EAKENSTSGP 180 LSASAVSMPS TPSMEKEALS SIISSWLDGK NMPAIDSAMD SMQEDVADVA APNPRVGSRE 240 SHSSLSSEDC DMEWLEEIMP DVVINDQDMD PNFILSSLEN GQGETPLNET GNNYCRTTHR 300 IDERNKTVSS HEAVSSTNEK SRLLMEAADD GRLEWDWQDY HELVWPAMSW ELETEQENVG 360 LSSIPSWPLW DTGTDLLQNC MNHEAPVEID SMHIMSENDQ NPSALAAWLL S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGRAPCCEKV GLKRGRWTAE EDQILTNYIL SNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TSQEENIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR  120
IPSDEKLPQA VVDLAKKGAL MPIKQSRKTS RISNMKKNKT SKNSNLAEPK EAKENSTSGP  180
LSASAVSMPS TPSMEKEALS SIISSWLDGK NMPAIDSAMD SMQEDVADVA APNPRVGSRE  240
SHSSLSSEDC DMEWLEEIMP DVVINDQDMD PNFILSSLEN GQGETPLNET GNNYCRTTHR  300
IDERNKTVSS HEAVSSTNEK SRLLMEAADD GRLEWDWQDY HELVWPAMSW ELETEQENVG  360
LSSIPSWPLW DTGTDLLQNC MNHEAPVEID SMHIMSENDQ NPSALAAWLL S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-75	MYB family protein