PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT60434.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 303aa    MW: 33392 Da    PI: 9.1374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT60434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018111133123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ Fs++  L  H++ H
  PHT60434.1 111 FSCNFCKREFSTSQALGGHQNAH 133
                 89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDIFAMKKTC SSEASSISAA SKESHEVVTN TKKMKEKVVE GPQLNKPSCV DLLVDLKVHN  60
GFNNNNKTNS MISCSNLEPN LFNSTSTNTH ASESSNEATP KQKRTSDGRT FSCNFCKREF  120
STSQALGGHQ NAHKQERALA KRRNGLVDVV SPFGPPNYHP YYNRYSNFNS HIPFHGSFAS  180
RPSLGGTVQG GNSFSAILKP ITSYQTWPFL SSYNFRFNPD KWSISSSSSS LFRSENPQEN  240
YNIGKIGIGG ASLANSISFE NKKSGNNLTL MNSPINVDDD NNLGGNNHMK KEEEEGLDLN  300
LKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.15e-17C2H2 family protein