PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60435.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 300aa MW: 33457.1 Da PI: 8.4666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H PHT60435.1 110 FSCNFCKREFSTSQALGGHQNAH 132 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MDVFAMKKSC SSEASSISAT SKDSHEIITN AKKMKEKVVE VEECQLKPHV LSSSDVLLDI 60 EVHNDYNNKK NVSCLNHELN LFNSTQAGAS HESSNEATPK QKRSSVARTF SCNFCKREFS 120 TSQALGGHQN AHKQERVLAK RRNKLDDMVS LFGPTNYHPY YNPYSSFNSH VPFHGSFATR 180 SLLGIQGDSS AIHKPSSYET WPFSSSYNFR SDPHKWSSSS SSSLFKTQNI IGNNIHGASL 240 ENSLFTSKNN TKGFNLMDSS VNVNDNLGGK NYLKIGLGEE KAKKNNEEEE ESKLDLNLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	5e-24	C2H2 family protein