PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60553.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 27041.8 Da PI: 9.7942

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.6	4.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs++g++yeys+ PHT60553.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSN 59 79***********************************************95 PP
2	K-box	102.9	4.1e-34	80	173	8	100
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le++l++iRskK+e++l+++e+lqk+e +l++en+ Lr+k++e PHT60553.1 80 CtTQELNAQFYQQESKKLRQQIQMMQNSNRHLVGEGLGSLNVRELKQLENRLERGLSRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIAE 173 2478899************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFST RGRVYEYSNN 60 NIKATIERYK KATAEHSNAC TTQELNAQFY QQESKKLRQQ IQMMQNSNRH LVGEGLGSLN 120 VRELKQLENR LERGLSRIRS KKHEMILAET ENLQKREIQL EQENTFLRSK IAENERLQEL 180 SMMPAGGGQE YSAIQHYLAG NMLQLNMMEG QAGVSTSYDP LSPHHHDKKS LHLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-99	MIKC_MADS family protein