PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT96814.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 28184.2 Da PI: 9.7656

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT96814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.5	1.5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKK +E+SvLCdaeva+i+fs++gkl++ys+ PHT96814.1 9 KRIENKISRQVTFSKRRSGLLKKTNEISVLCDAEVALIVFSPNGKLFDYST 59 79***********************************************96 PP
2	K-box	94.9	1.3e-31	82	175	8	100
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e+ e+++ e kL +++e Lqr++Rh++Ge+L+ +l+e q LeqqL+++lk+iR++Kn+l+le+i++lqkkekelqe+n+ ++kk++e PHT96814.1 82 GnDTETYKENWTLECPKLMARVELLQRNIRHFMGEELDAFNLREFQCLEQQLDTALKRIRTRKNQLMLESISQLQKKEKELQERNNLISKKIKE 175 335788899**********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGRVELKR IENKISRQVT FSKRRSGLLK KTNEISVLCD AEVALIVFSP NGKLFDYSTQ 60 SSMESILERY ENYSYAERKL NGNDTETYKE NWTLECPKLM ARVELLQRNI RHFMGEELDA 120 FNLREFQCLE QQLDTALKRI RTRKNQLMLE SISQLQKKEK ELQERNNLIS KKIKEKQTVE 180 TPQWGQINPG QSSTMTFLLQ SPSQLPNLTI GGPFQAMDEG QNRHGSNTLM PPWMPHHVHN 240 KV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	6e-85	MIKC_MADS family protein