PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97161.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 219aa MW: 24027.3 Da PI: 8.3807

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97	2e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg+++ ++++++q+++e+ PHT97161.1 2 SCNGCRILRKGCNENCILRQSLqgienPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVHGAVGLLWMGNWHVCQSAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l PHT97161.1 101 VLK 103 765 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MSCNGCRILR KGCNENCILR QSLQGIENPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWMGN WHVCQSAVET VLKGGVLRPL PEFSGVATSP 120 AEFYSASEAN DVDLFRSQSS NFKSKRKVMD EIAEDLDLGL SPRTMVAAGG KLSRRTEKRR 180 AATPSLNSDE SDTTTLESGF MYQQNPQQGN ETKLLRLFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-70	LBD family protein