PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT97243.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26995.5 Da    PI: 8.0783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT97243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.81.6e-091050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                ri + ++r+v + kR++ + KKA+ L +LCd+e+ +  f +
  PHT97243.1 10 RIVDPRKRKVLLDKRLESLYKKAKHLEILCDIEIGMFFFTP 50
                788999****************************9888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MTKMGVRPSR IVDPRKRKVL LDKRLESLYK KAKHLEILCD IEIGMFFFTP GDQNIFAWPS  60
LTQATDWVKN YIASFDKQRP IKMVKHEDFL QSVLNAKEGK INQLEKLVEK KEMEYNFNQL  120
VEARKRFDEL ENLTAIVARH GGIALRPLSH RGEVDKSASE MLFDGKVGTV MCMENPCEAM  180
RGALIDVREG TLKMRLDDEE LALRLQHLWV QLASPLPVVG LTLPVPPDFS VEVYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.14e-15M-type_MADS family protein