PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97938.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 696aa MW: 75716.2 Da PI: 6.9651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.2e-06	262	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C d+C +aHg PHT97938.1 262 PCPEFKK-GACAKSDSCEYAHG 282 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MCTGTRSKVC PSDLNMDKKD GVSRNCSKLL ELSASDDLAG FICEVEKGCA VDEFSFWYGR 60 RFGSKKMGFE ERTPLMIASM YGSTEILKYI LGTGKVDVNR ACGSDGATAL HCAAAGGLES 120 SIEVFKILID ASADVNVCDS SGNRPCDVIA SFPKSLRNSK RKSLELLLNG SLAELAEQEE 180 EEGKEAIQMT KEGSEKKEYP IDTSLPDIND GIYGSDDFRM YCFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPRKYNYTC VPCPEFKKGA CAKSDSCEYA HGVFESWLHP AQYRTRLCKD 300 ETGCSRKVCF FAHKPEELRP LYASTGSAIP SPKATPVSSM DMSTLSPLAL GSSSMLLPTS 360 STPPMSPAVT CSSPMGGNLW QSKVNITPPA LQLPGSRLKT SLNARDLDLD MDMLGLESIR 420 TQQQLRQQLI DEMAGLSSPS CWNKDNRMGD LKPTNLDDVF GSMDSQLLSQ LQGLSPRVAS 480 TTSSQLYSPS VSHLQGLSPK VSGNGGSQMQ SPTGLQMRQN MNQFQSSYSN IPQSSSPLRK 540 QPSAYGFDSA AAVAQAVMNS RSAAFAKRSQ SFIDRSGMSH RAVPNGVANS PPLMSSDWGS 600 PDGKLEWGFN SDDTNKLKRS QSFGFRGGNG APARSSTITP SQVNEPDVSW VHSLVKDVSS 660 TGTGLYSSEQ KHGGGVRESI PPWLEQMYID QERIVA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MCTGTRSKVC PSDLNMDKKD GVSRNCSKLL ELSASDDLAG FICEVEKGCA VDEFSFWYGR  60
RFGSKKMGFE ERTPLMIASM YGSTEILKYI LGTGKVDVNR ACGSDGATAL HCAAAGGLES  120
SIEVFKILID ASADVNVCDS SGNRPCDVIA SFPKSLRNSK RKSLELLLNG SLAELAEQEE  180
EEGKEAIQMT KEGSEKKEYP IDTSLPDIND GIYGSDDFRM YCFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYNYTC VPCPEFKKGA CAKSDSCEYA HGVFESWLHP AQYRTRLCKD  300
ETGCSRKVCF FAHKPEELRP LYASTGSAIP SPKATPVSSM DMSTLSPLAL GSSSMLLPTS  360
STPPMSPAVT CSSPMGGNLW QSKVNITPPA LQLPGSRLKT SLNARDLDLD MDMLGLESIR  420
TQQQLRQQLI DEMAGLSSPS CWNKDNRMGD LKPTNLDDVF GSMDSQLLSQ LQGLSPRVAS  480
TTSSQLYSPS VSHLQGLSPK VSGNGGSQMQ SPTGLQMRQN MNQFQSSYSN IPQSSSPLRK  540
QPSAYGFDSA AAVAQAVMNS RSAAFAKRSQ SFIDRSGMSH RAVPNGVANS PPLMSSDWGS  600
PDGKLEWGFN SDDTNKLKRS QSFGFRGGNG APARSSTITP SQVNEPDVSW VHSLVKDVSS  660
TGTGLYSSEQ KHGGGVRESI PPWLEQMYID QERIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein