PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97965.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 370aa MW: 40864.4 Da PI: 6.185

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+ I+ g+ R+ k+c++rw +yl PHT97965.1 14 KGPWTPEEDIILVSYIQEHGPGNWRNIPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PHT97965.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKV 120 ESHGNDAHDH ENNHQEGAST SSSSSQSRIS KGQWERRLQT DIHTAKQALC EALSLDASPN 180 KTIPINPEQQ QQPAVQASMT YASSAENIAK LLQNWMKNSP NSTSSSSSKI TQQMSLNNNL 240 SVGALSSSSP SEGTVNVAPP QGLDSLFSFN SSNNSDVSQS VSIDEGGNLI STPENNNAGI 300 FQVESKPILP DFKPESGIHQ EESKQNLETQ VPLTLLEKWL LDDANAQAEQ EDQLMGIGMG 360 MAMSETADLF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKV  120
ESHGNDAHDH ENNHQEGAST SSSSSQSRIS KGQWERRLQT DIHTAKQALC EALSLDASPN  180
KTIPINPEQQ QQPAVQASMT YASSAENIAK LLQNWMKNSP NSTSSSSSKI TQQMSLNNNL  240
SVGALSSSSP SEGTVNVAPP QGLDSLFSFN SSNNSDVSQS VSIDEGGNLI STPENNNAGI  300
FQVESKPILP DFKPESGIHQ EESKQNLETQ VPLTLLEKWL LDDANAQAEQ EDQLMGIGMG  360
MAMSETADLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-100	MYB family protein