PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT98282.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 229aa    MW: 25337.5 Da    PI: 9.9613
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT98282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA85.67.4e-2765119258
   CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  p++VNaKQy++Il+RR+ Rak e e+kl  k rkp+lh SRh hA+rRpRg gGrF
  PHT98282.1  65 TPIFVNAKQYHGILRRRKLRAK-EMENKL-LKPRKPFLHLSRHLHAMRRPRGGGGRF 119
                 7********************9.566999.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MDQPISSDSQ SGDSNSSYKA ENLTNVMSSL SMQSYNVDYQ GHFYQCFGQP LGRIMLPLNL  60
TSDETPIFVN AKQYHGILRR RKLRAKEMEN KLLKPRKPFL HLSRHLHAMR RPRGGGGRFL  120
NTRKANGSIN NDANGTTKTS NMKCHPTGSQ NSDISSFNSP KETTNRMSCN SSEVTSLYSR  180
GSSFGTFPIH NSPSVDAFID MMNTGHDDIL MASKWGSAAA ASSCCNLKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.34e-31NF-YA family protein