PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98516.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 353aa MW: 39729.4 Da PI: 4.4583

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.4	3.9e-12	101	196	33	127
NAM 33 vikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.kgrapkge.ktdWvmheyr 127 ik v+iy Pw++ +e+k+ yf ++ +k++++++++ r+ +g+W+ + + +++++ +g++ g ++ ++ kg++ +g+ t+W+m ey PHT98516.1 101 PIKFVEIYADqTPWQFY---GSEDKSGYFITPLKKRKKSDQKHARTCGNGTWRGQTSAVPIKNRkGGSVLGYRRNYIYTsKGNKTSGSaTTNWLMREYF 196 477788876538*95...5678899******************************998677889**999666666665389*****6 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGEEEGAVKK GFVDVGGVEI SHWRGFESLN FRLNSGNLSF SLDGRAYWHL KLTVLTLLLL 60 AWSVRLYEVI FGNSQGTYEM GESDDDTCII TFLKGEHLRC PIKFVEIYAD QTPWQFYGSE 120 DKSGYFITPL KKRKKSDQKH ARTCGNGTWR GQTSAVPIKN RKGGSVLGYR RNYIYTSKGN 180 KTSGSATTNW LMREYFVGDD FFKVNNIPKQ DYALCRIKKH VRVKMDDDDD AVNMEEQDAL 240 ETIQGMLLEP DSTCCTTQEV AEETDQWESI INEVCDEKID GVENTTALVH GEYDLRGCGE 300 ISDVQEDGAD VIGSNGIWEA INGILNDVTV DIPDDLWLDV DHQPPLLLIS SST

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGEEEGAVKK GFVDVGGVEI SHWRGFESLN FRLNSGNLSF SLDGRAYWHL KLTVLTLLLL  60
AWSVRLYEVI FGNSQGTYEM GESDDDTCII TFLKGEHLRC PIKFVEIYAD QTPWQFYGSE  120
DKSGYFITPL KKRKKSDQKH ARTCGNGTWR GQTSAVPIKN RKGGSVLGYR RNYIYTSKGN  180
KTSGSATTNW LMREYFVGDD FFKVNNIPKQ DYALCRIKKH VRVKMDDDDD AVNMEEQDAL  240
ETIQGMLLEP DSTCCTTQEV AEETDQWESI INEVCDEKID GVENTTALVH GEYDLRGCGE  300
ISDVQEDGAD VIGSNGIWEA INGILNDVTV DIPDDLWLDV DHQPPLLLIS SST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	135	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-10	NAC family protein