PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98588.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 390aa MW: 45034.7 Da PI: 6.2793

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.4	2.8e-21	82	170	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rg.klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a +++ e+ rg kk++W+++s +m+erg ++sp+qC++k+++lnk+++++++ +++t ++++++ ++++ ++ PHT98588.1 82 KWTDDMVKLLITALSYIVEDPLcRGvFVKKGKWRAISCVMAERGHHVSPQQCEDKFNDLNKKFRRLNQVLGRGTaCDVVENPVLLEMMD 170 7************9877766243259*******************************************5488898888888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MQVNHQLAGH PNQAPVVLMQ HAPQVMSLAI SNMEHISQEM QLLDTVRFHR VEMPEAYHEG 60 LNDVREVSGH TEEKQPVYQR MKWTDDMVKL LITALSYIVE DPLCRGVFVK KGKWRAISCV 120 MAERGHHVSP QQCEDKFNDL NKKFRRLNQV LGRGTACDVV ENPVLLEMMD LSYELKEEVN 180 KILGSRQLFY EEMCSFNNRN RLFLPHDQEV QQSVYLAVRG NYKYELGSMS QDLPLKRKIR 240 GEERVSNMAC ASLDCTTMVD PCLVQDMPAK RKVGGEGRHL NMAHLSLNDA TASKPDPNVL 300 RPNSNGIHFS MNNEEKEVQD EHILPCLQKL EEQKRQIQAQ ILQLERQRFK FMSCCSEEDR 360 ELQEMMLDNE VIKLENEQLM LELKRGGASV

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MQVNHQLAGH PNQAPVVLMQ HAPQVMSLAI SNMEHISQEM QLLDTVRFHR VEMPEAYHEG  60
LNDVREVSGH TEEKQPVYQR MKWTDDMVKL LITALSYIVE DPLCRGVFVK KGKWRAISCV  120
MAERGHHVSP QQCEDKFNDL NKKFRRLNQV LGRGTACDVV ENPVLLEMMD LSYELKEEVN  180
KILGSRQLFY EEMCSFNNRN RLFLPHDQEV QQSVYLAVRG NYKYELGSMS QDLPLKRKIR  240
GEERVSNMAC ASLDCTTMVD PCLVQDMPAK RKVGGEGRHL NMAHLSLNDA TASKPDPNVL  300
RPNSNGIHFS MNNEEKEVQD EHILPCLQKL EEQKRQIQAQ ILQLERQRFK FMSCCSEEDR  360
ELQEMMLDNE VIKLENEQLM LELKRGGASV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-67	Trihelix family protein