PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT98647.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21610.9 Da    PI: 10.4311
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT98647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.4e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKA+ELS+LCda++ +i+fs tgkl+eyss
  PHT98647.1  9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFEYSS 59
                68***********************************************96 PP
2K-box454.5e-1677172398
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +++ ++l++++ +s ++ +a L +   +  re+R+l Ge+L+ L l eL++Le+ +e +++++ + K + ++++i+ l++k  +lqeen +L+++ 
  PHT98647.1  77 NNTPEQLQSSNLQSEKKTYATLSRDFVEKNRELRQLHGEELQGLGLDELMKLEKLVEGGISRVLKIKGDKFMREISSLKRKATQLQEENSQLKQQS 172
                 455566999*******************9****************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD ADIGLIVFSA TGKLFEYSSS  60
SMMQLIEKHK MQSERDNNTP EQLQSSNLQS EKKTYATLSR DFVEKNRELR QLHGEELQGL  120
GLDELMKLEK LVEGGISRVL KIKGDKFMRE ISSLKRKATQ LQEENSQLKQ QSQVNYTFPF  180
CKKKSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-50MIKC_MADS family protein