PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99052.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 414aa MW: 46781.9 Da PI: 8.5594

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.8	7.6e-17	105	151	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl+++F ++ ++AA +L+ + ++ KriCR++GI+RWP+ kik PHT99052.1 105 SVSLEDLKEQFGKKREEAAESLKFSISTFKRICREHGISRWPSTKIK 151 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MLSMETKSEN PVCGKPVQIV DESPKFQCMQ LDAKCTAEES PLHIVPSRGD CALPVPFQQR 60 SITEHLNLKR KVDTGPSGQD VTIFELCNKQ KINKKYKKTW RIGDSVSLED LKEQFGKKRE 120 EAAESLKFSI STFKRICREH GISRWPSTKI KRERLLLSSL SFNGTDRVAA NTQMRITKGL 180 TSLASTFSVK SNLQKSQSSN LSVNNEKGTS LNGNLLEKNE DGDRENIMIQ VENSSNQELV 240 YIPQEFRPAC DSLIPDVPTI LSRLPRERMP AEDATQLISS APGQQGERIA RQIEMTNEIS 300 QLEKQHLGKE RFKCDLSVED SSSRDSRNVS EPIQRFGGDI SEESLNVRYE ELKRKEQELR 360 AQLEAVQKET AGIAEQRNEK SKQTKHLVSL AEEKTASSTK EKHMMKIATT KLNN

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MLSMETKSEN PVCGKPVQIV DESPKFQCMQ LDAKCTAEES PLHIVPSRGD CALPVPFQQR  60
SITEHLNLKR KVDTGPSGQD VTIFELCNKQ KINKKYKKTW RIGDSVSLED LKEQFGKKRE  120
EAAESLKFSI STFKRICREH GISRWPSTKI KRERLLLSSL SFNGTDRVAA NTQMRITKGL  180
TSLASTFSVK SNLQKSQSSN LSVNNEKGTS LNGNLLEKNE DGDRENIMIQ VENSSNQELV  240
YIPQEFRPAC DSLIPDVPTI LSRLPRERMP AEDATQLISS APGQQGERIA RQIEMTNEIS  300
QLEKQHLGKE RFKCDLSVED SSSRDSRNVS EPIQRFGGDI SEESLNVRYE ELKRKEQELR  360
AQLEAVQKET AGIAEQRNEK SKQTKHLVSL AEEKTASSTK EKHMMKIATT KLNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-10	Nin-like family protein