PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99053.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 631aa MW: 72116.9 Da PI: 4.8658

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.3	6.1e-18	244	290	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl+++F ++ ++AA +L+v+ ++ KriCR++GI+RWP+ kik PHT99053.1 244 SVSLEDLKEQFGKKREEAAESLNVSISTFKRICREHGISRWPSSKIK 290 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MLVRDKEEEV EFDEMELSDM VNPLISSPDS TCWQIQQVWE PDDMLYFDYS LLPPFPMEDF 60 TLWNHSWSPP PPPHRQESAR MKRAKSKAHF ERLSDEAIDK AAEEFIRKFY KELRKQQNII 120 DVRFEEKAYT AGTSQVSLSV LSVETKAENP VSGKLVQIVD ESPKFQCMQL DAKSPAEESP 180 LHIVPSRGDC ALPVSFQQRS ITEHVNLKRK VDTGPSGQDL TIFELGNKQK MNKKYKKTWR 240 IGDSVSLEDL KEQFGKKREE AAESLNVSIS TFKRICREHG ISRWPSSKIK RERLLLSSLS 300 CNGTDRVAAN TQMRITKGLT ALASTFSVKS NQQKSRSSNL SVNDENGTSS NGNLLEKNEN 360 SDRENIMIQV EDSANQELVY IPQEFGPACD SLIPDVPTIL SRLPRERMPA EDATQLISSA 420 PGQQGERIAR QIDMTSEISQ LEKQHLGEEW FKCDLSVEDS SSYDSRNVSE PIQGHAIVDS 480 THMEVQPFLE SVSTQPFNSF SCHENTAENT KLLFNNLIMS TLEDLIDPEN ETSMTKALPI 540 LADNLSLFSE EQAEQILELS VYFPTLVHSW REFSRSQTYN QKSLAETGKI RDLAETLVKD 600 EESLSIRYEE LERKEQELMH NWKQCRKRRQ G

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MLVRDKEEEV EFDEMELSDM VNPLISSPDS TCWQIQQVWE PDDMLYFDYS LLPPFPMEDF  60
TLWNHSWSPP PPPHRQESAR MKRAKSKAHF ERLSDEAIDK AAEEFIRKFY KELRKQQNII  120
DVRFEEKAYT AGTSQVSLSV LSVETKAENP VSGKLVQIVD ESPKFQCMQL DAKSPAEESP  180
LHIVPSRGDC ALPVSFQQRS ITEHVNLKRK VDTGPSGQDL TIFELGNKQK MNKKYKKTWR  240
IGDSVSLEDL KEQFGKKREE AAESLNVSIS TFKRICREHG ISRWPSSKIK RERLLLSSLS  300
CNGTDRVAAN TQMRITKGLT ALASTFSVKS NQQKSRSSNL SVNDENGTSS NGNLLEKNEN  360
SDRENIMIQV EDSANQELVY IPQEFGPACD SLIPDVPTIL SRLPRERMPA EDATQLISSA  420
PGQQGERIAR QIDMTSEISQ LEKQHLGEEW FKCDLSVEDS SSYDSRNVSE PIQGHAIVDS  480
THMEVQPFLE SVSTQPFNSF SCHENTAENT KLLFNNLIMS TLEDLIDPEN ETSMTKALPI  540
LADNLSLFSE EQAEQILELS VYFPTLVHSW REFSRSQTYN QKSLAETGKI RDLAETLVKD  600
EESLSIRYEE LERKEQELMH NWKQCRKRRQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-12	Nin-like family protein