PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99055.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 686aa MW: 78023.1 Da PI: 5.2139

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.9	8.2e-18	244	290	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl++ F ++ +dAA +L+v+ ++ KriCR++GI+RWP+ kik PHT99055.1 244 SVSLEDLKELFGKKREDAAESLNVSISTFKRICREHGISRWPSSKIK 290 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MLEQHEEVEL GEMELEINSN MVNPLISSPA STCWQIQQVW DPDNMLYFDC SELPPSPMED 60 FTLWNHSWSP LPPYHQESAR MERAKSKAHF ERLLDEAIDK AAEEFLRKFW KELREQQNII 120 DVRLKKKAYT AGTSQVSLSM LSMETKSENP GCRKPVQIVD ESPKFQCMQL DAKSPAEESP 180 LHIVPSRGDC ALPVPFQQRS ITEHVNLKRK VDTGPSGQDI TIFELCNKQK MNKKYKKTWR 240 IGDSVSLEDL KELFGKKRED AAESLNVSIS TFKRICREHG ISRWPSSKIK RERLLLSSLS 300 CNGTDRVAAN TQMRITKGLT ALASTFSVKS NQQKSRSSNL SVNDENGTSS NGNLLEKNEN 360 SDRENIMIQV EDSANQELVY IPQEFGPACD SLIPDVPTIL SRLPRERMPA EDATQLLSSA 420 PGQQGERIAR QIDMTSEISQ LEKQHLGEER FKCDLSVEDS SSYDSRNVSE PIQGHAIVDS 480 THMEVQPLLE SVSTQPLNSF SCHENTAKNT KLLFNNLIML TLEDLIDPEN ETSMTKALPI 540 LADNLSLFSE EQAKQILELS VYFPTLVHSW REFSRSQMYN QKSLVETGKI RDLVETSVKD 600 EESPSIRYEE LERKEQELMA QLEAVQKEKA GIAEQRSEKS KQTKHLVSLA EEKAASSTKE 660 KHMMKIATTK LNNVVDQWTK IQSFFT

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MLEQHEEVEL GEMELEINSN MVNPLISSPA STCWQIQQVW DPDNMLYFDC SELPPSPMED  60
FTLWNHSWSP LPPYHQESAR MERAKSKAHF ERLLDEAIDK AAEEFLRKFW KELREQQNII  120
DVRLKKKAYT AGTSQVSLSM LSMETKSENP GCRKPVQIVD ESPKFQCMQL DAKSPAEESP  180
LHIVPSRGDC ALPVPFQQRS ITEHVNLKRK VDTGPSGQDI TIFELCNKQK MNKKYKKTWR  240
IGDSVSLEDL KELFGKKRED AAESLNVSIS TFKRICREHG ISRWPSSKIK RERLLLSSLS  300
CNGTDRVAAN TQMRITKGLT ALASTFSVKS NQQKSRSSNL SVNDENGTSS NGNLLEKNEN  360
SDRENIMIQV EDSANQELVY IPQEFGPACD SLIPDVPTIL SRLPRERMPA EDATQLLSSA  420
PGQQGERIAR QIDMTSEISQ LEKQHLGEER FKCDLSVEDS SSYDSRNVSE PIQGHAIVDS  480
THMEVQPLLE SVSTQPLNSF SCHENTAKNT KLLFNNLIML TLEDLIDPEN ETSMTKALPI  540
LADNLSLFSE EQAKQILELS VYFPTLVHSW REFSRSQMYN QKSLVETGKI RDLVETSVKD  600
EESPSIRYEE LERKEQELMA QLEAVQKEKA GIAEQRSEKS KQTKHLVSLA EEKAASSTKE  660
KHMMKIATTK LNNVVDQWTK IQSFFT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-12	Nin-like family protein