PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99618.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 357aa MW: 40087.6 Da PI: 6.1861

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PHT99618.1 193 YECKTCNRTFPSFQALGGHRASH 215 99**********99999998887 PP
2	zf-C2H2	13.9	0.00016	270	292	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PHT99618.1 270 HECSYCGAEFTSGQALGGHMRRH 292 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MEALEEVVGG SSKDLFHIVK GKRTKRLRLQ SPNIPFSITS HDSLTACNNG NDNEAYNVTC 60 NVPSSNNNNN NKTNIEDGSD NRDVVACINN NNIESSSGNG EDIACNNNIN NNNNEILSSA 120 ASSEAFINTF TEEEEETAKC LVLLSKSADD YHPRNVDFFN DDLRLYPTKF NSKRYIETST 180 NSIDGTKAGI YVYECKTCNR TFPSFQALGG HRASHKKPKT LHTEYNKKSY FDFSDEDDYQ 240 LHSPSTTTTT LYNKNKNNNN KYYSSSPRIH ECSYCGAEFT SGQALGGHMR RHRGGANVNS 300 PLYLSNLSPA TSIDHQEFGN NNNNVMKKQR DHELSLDLNL PVQDQEQTQR QLVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MEALEEVVGG SSKDLFHIVK GKRTKRLRLQ SPNIPFSITS HDSLTACNNG NDNEAYNVTC  60
NVPSSNNNNN NKTNIEDGSD NRDVVACINN NNIESSSGNG EDIACNNNIN NNNNEILSSA  120
ASSEAFINTF TEEEEETAKC LVLLSKSADD YHPRNVDFFN DDLRLYPTKF NSKRYIETST  180
NSIDGTKAGI YVYECKTCNR TFPSFQALGG HRASHKKPKT LHTEYNKKSY FDFSDEDDYQ  240
LHSPSTTTTT LYNKNKNNNN KYYSSSPRIH ECSYCGAEFT SGQALGGHMR RHRGGANVNS  300
PLYLSNLSPA TSIDHQEFGN NNNNVMKKQR DHELSLDLNL PVQDQEQTQR QLVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-35	C2H2 family protein