PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99973.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 228aa MW: 25005.9 Da PI: 8.6161

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.6	7.1e-46	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+ PHT99973.1 12 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKS 110 7**********************************************************************************************9998 PP DUF260 100 e 100 e PHT99973.1 111 E 111 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MSSSSSLSSN SPCAACKFLR RKCQPECVFA PYFPPDQPQK FANVHKVFGA SNVTKLLNEL 60 QPHQREDAVN SLAYEADMRL RDPVYGCVGV ISLLQHQLRQ LQMDLSCAKS ELSKYQNLGG 120 IASTTTHGLL AAAAAAAANH HHHQQFNFMS GGGGGGGGGG RDHSHHLYHH QFFPRDQQQQ 180 QQQHMFRAFE GHGSNNFDAS SLLIGQLSQF QQPRAARADG RRTPVDPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	1e-84	LBD family protein