PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT99996.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 141aa    MW: 16435.1 Da    PI: 9.8129
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT99996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.54.3e-1429116191
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklF.GasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                 +C +C + r++C+++C++ ++fp+++  ++ +v ++F G +++ kllk+   ++ ++a+++++ e++ar++d   G+ +++ +l+qqle+ +
  PHT99996.1  29 SCPSCMHSRKGCSENCFMKKHFPEKD--DYDAVGQVFcGPEHIKKLLKKC--TNTKEAARCMIQEGRARMNDVEGGSWRLVENLRQQLEEIH 116
                 69*********************988..899****997889999999995..456789******************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MRYKVKDRIE RKPKGKRKRE EETQEKQLSC PSCMHSRKGC SENCFMKKHF PEKDDYDAVG  60
QVFCGPEHIK KLLKKCTNTK EAARCMIQEG RARMNDVEGG SWRLVENLRQ QLEEIHNMPK  120
PFVFLVVGVT NTNKIALIHV S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11120RKPKGKRKRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.12e-08LBD family protein