PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU00188.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24396.7 Da    PI: 7.9649
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU00188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.35.5e-201157349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ie k   qvtfskRr  ++KKA+EL++LC++e+a+i+fs+  k++ +
  PHU00188.1 11 IEVKNYLQVTFSKRRSDLFKKASELCTLCGIEIAIIVFSPARKVFSF 57
                6777778**********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGRQKIKIAN IEVKNYLQVT FSKRRSDLFK KASELCTLCG IEIAIIVFSP ARKVFSFGHA  60
NVESLIDRFL SRNNTNNNPI ANNSLQLVEA HRNANVCGLN FQLTQILGEV EIEKKRGESL  120
DQMRKSSQSQ CWWEAPISQL DLQEIEQLKD SMEALKKYVT NQASKFMVNE IANSSTFFGD  180
NGNGIFDNYD IKPPRTMPSS SDLHNHSLGF DSAALF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-54M-type_MADS family protein