PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00262.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 242aa MW: 26846.5 Da PI: 6.0343

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	152.6	7.4e-48	46	146	2	102
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 l+++ ++ie+atdfknh+l l+rikki+kadedv+misae+Pvl++kace+fi eltl swlh++enk rtl+k+dia a++rtd+fdflvdi+prde PHU00262.1 46 LRNYERQEIEQATDFKNHQLSLTRIKKIMKADEDVRMISAETPVLFAKACEIFIQELTLSSWLHTKENKHRTLQKNDIAVAISRTDTFDFLVDIIPRDE 144 78999999******************************************************************************************8 PP NF-YC 101 lk 102 +k PHU00262.1 145 VK 146 75 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MDNNNTHQSL AETSTTAATA AAAAQSAAYP PQRPYDHVLQ QQLQMLRNYE RQEIEQATDF 60 KNHQLSLTRI KKIMKADEDV RMISAETPVL FAKACEIFIQ ELTLSSWLHT KENKHRTLQK 120 NDIAVAISRT DTFDFLVDII PRDEVKDEGV GLGLAPGGVP YYYSPLDQPA PGGVVLGRPA 180 IPGTVPGVVS DVDPSMYVPY MSLQVCIEAE SRSKIRAKGL VDGQRMNIPT PFLGPEERRR 240 LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-61	NF-YC family protein