PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00592.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 1674aa MW: 183516 Da PI: 6.1664

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.3e-08	809	850	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E e++++ + +G++ +++Ia+ + ++t +c+++++k PHU00592.1 809 PWTSKEREIFIEKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 850 8***************99.*****.*********98 PP
2	Myb_DNA-binding	31.4	4.5e-10	1027	1067	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ + t++r++g +R++ qck ++ PHU00592.1 1027 DWTDEEKSAFIQAVSAYGKD-FITVSRCVG-TRSRDQCKIFFS 1067 5***************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1674 aa Download sequence
MPPEPLPWDR KDFFKERRHD RSEVLPRWRE PASHHHYTSS RWLPDFRSRA PPPGHGKQGS 60 WQMYPEELGH GFMTSRSNEK IVEDESCRQS RGDAGKYGRN SSSSRENRSF GQRDWRGGGG 120 AHSWEAASPS GSGSVRQNDA TNNQRSLDVM EPHSEHVNTC DQSHSRDQHN KSATANATAS 180 TGQRFERETS LGSIEWRPLK WTRSGSLSSR GSLSHSGSMG VDSNETKPEL RLGNSKAVQS 240 LTGDATACVT SAAPSEETTS RKKPRLGWGE GLAKYEKKKV EGPEDNAVKV GTSISGDSVE 300 PSHSQLLNQA DRSPRVAVFP DCQSPATPSS VACSSSPGLE DKQLVKATNI DQDVGNLCGS 360 PNVVSQYYAE GSGFNLENWD LAQISNLNSS INKLLQSEDP SSVDSGFMRS TAVNKLLVWK 420 SDITKALEKT EAEIDSLENE LKTLISGPKN TQLVPSASCS PPKDCNANSH EDQGATSNIA 480 SGPAPLVVDI PDDLVGEEGA NIHENEQTEV KVEDIDSPGS ATSKFVELPS EKDVAPVDVL 540 KHGGIFISDD SKSRRLNVNM CSFTEESAKS RSSDVKLCSF NEEKARDTLV CWERSQPTAG 600 YSYSASNGIL NGGEDALYNL ILAANKDSAR RAFEVFKNLL PASKCSFDFS RTVRVSLLQI 660 DHAVEERFAK RKQFQQFKEK IIALKFRVHQ HLWKEDIRML SVRRFRAKSQ KKFDLSLRPV 720 QIGHQKHRAT VRSRFSTTVG NLSLVPSSEI LNFASRLLSE LGAKVYRNTL RMPALILDQK 780 ERMMTRFISK NSLVEDPCAV EEERGLINPW TSKEREIFIE KLATFGKDFR KIASFLDHKT 840 TADCIEFYYK NHKSDCFERT RRKPDYSKQA KVCSANRYLV ASSGKRWNRE ANSASLDILG 900 AASAIAANVE DSIEIRPKGT SKYTVRMITE YKASRLNELE RSNSLDVCHS ERETVAVDVL 960 AGICGSLSSE AMSSCITSSV DPGEGNQEWK HQKVGSSTRL PRTPEVTQSM DDETCSDESC 1020 GEMDPTDWTD EEKSAFIQAV SAYGKDFITV SRCVGTRSRD QCKIFFSKAR KCLGLDKILP 1080 VPGNLERQDV NGGSDPDACS METKLLCNGK SSLMLEDVSD LCMKVGISNH NLTSSDEKDG 1140 AGELDSVDIL QVNCDVDKQE VEFNRDCDQI GACIGNGRGD ENMVIVSQEG VEIGGDASEN 1200 GLLDIPCPNE VSAKHLGEEI SSPEHDLKDR KAEIAEVGRS NCSLEDRKPN MVLSGNNSGL 1260 AAPRGGGLCP LNGFQNMTHL ESDSECKLYL ESNISVQSKQ MPEGANADKL SEELENVCDE 1320 QCENATQSAE LPLPSHSRLA QVESCQILGS YSVGESALTQ FGDPGCRTSA ALQEIQKVGR 1380 NLQLDTFSTT GCFLQKCNGT NRGGGSVSDV LIPNREQTAG SSSNLEKHCR NGDVKLFGQI 1440 LSKPCPQANP SSNAHRSDGS NQQLKIGSDS FSASHILDGN SATAKFERNN FPCSETHQLR 1500 SFGFWDGNRI QTGFSSLPDS AILLAKYPAA FGNYGISSTK MEQPTLHGAV KMAERNLNGV 1560 PGFPTNASGN NGVAAADYQV YRNRDVQPFT IEMKQRQEAF SEMQRKNGFD VVSGVQQQAR 1620 GVLVGRGGIL QCTGVSDPVA AIKMHYAKAE QFSGQTASII REDDSWRSKG DVSR

Sequence ? help Back to Top

Protein Sequence Length: 1674 aa Download sequence

MPPEPLPWDR KDFFKERRHD RSEVLPRWRE PASHHHYTSS RWLPDFRSRA PPPGHGKQGS  60
WQMYPEELGH GFMTSRSNEK IVEDESCRQS RGDAGKYGRN SSSSRENRSF GQRDWRGGGG  120
AHSWEAASPS GSGSVRQNDA TNNQRSLDVM EPHSEHVNTC DQSHSRDQHN KSATANATAS  180
TGQRFERETS LGSIEWRPLK WTRSGSLSSR GSLSHSGSMG VDSNETKPEL RLGNSKAVQS  240
LTGDATACVT SAAPSEETTS RKKPRLGWGE GLAKYEKKKV EGPEDNAVKV GTSISGDSVE  300
PSHSQLLNQA DRSPRVAVFP DCQSPATPSS VACSSSPGLE DKQLVKATNI DQDVGNLCGS  360
PNVVSQYYAE GSGFNLENWD LAQISNLNSS INKLLQSEDP SSVDSGFMRS TAVNKLLVWK  420
SDITKALEKT EAEIDSLENE LKTLISGPKN TQLVPSASCS PPKDCNANSH EDQGATSNIA  480
SGPAPLVVDI PDDLVGEEGA NIHENEQTEV KVEDIDSPGS ATSKFVELPS EKDVAPVDVL  540
KHGGIFISDD SKSRRLNVNM CSFTEESAKS RSSDVKLCSF NEEKARDTLV CWERSQPTAG  600
YSYSASNGIL NGGEDALYNL ILAANKDSAR RAFEVFKNLL PASKCSFDFS RTVRVSLLQI  660
DHAVEERFAK RKQFQQFKEK IIALKFRVHQ HLWKEDIRML SVRRFRAKSQ KKFDLSLRPV  720
QIGHQKHRAT VRSRFSTTVG NLSLVPSSEI LNFASRLLSE LGAKVYRNTL RMPALILDQK  780
ERMMTRFISK NSLVEDPCAV EEERGLINPW TSKEREIFIE KLATFGKDFR KIASFLDHKT  840
TADCIEFYYK NHKSDCFERT RRKPDYSKQA KVCSANRYLV ASSGKRWNRE ANSASLDILG  900
AASAIAANVE DSIEIRPKGT SKYTVRMITE YKASRLNELE RSNSLDVCHS ERETVAVDVL  960
AGICGSLSSE AMSSCITSSV DPGEGNQEWK HQKVGSSTRL PRTPEVTQSM DDETCSDESC  1020
GEMDPTDWTD EEKSAFIQAV SAYGKDFITV SRCVGTRSRD QCKIFFSKAR KCLGLDKILP  1080
VPGNLERQDV NGGSDPDACS METKLLCNGK SSLMLEDVSD LCMKVGISNH NLTSSDEKDG  1140
AGELDSVDIL QVNCDVDKQE VEFNRDCDQI GACIGNGRGD ENMVIVSQEG VEIGGDASEN  1200
GLLDIPCPNE VSAKHLGEEI SSPEHDLKDR KAEIAEVGRS NCSLEDRKPN MVLSGNNSGL  1260
AAPRGGGLCP LNGFQNMTHL ESDSECKLYL ESNISVQSKQ MPEGANADKL SEELENVCDE  1320
QCENATQSAE LPLPSHSRLA QVESCQILGS YSVGESALTQ FGDPGCRTSA ALQEIQKVGR  1380
NLQLDTFSTT GCFLQKCNGT NRGGGSVSDV LIPNREQTAG SSSNLEKHCR NGDVKLFGQI  1440
LSKPCPQANP SSNAHRSDGS NQQLKIGSDS FSASHILDGN SATAKFERNN FPCSETHQLR  1500
SFGFWDGNRI QTGFSSLPDS AILLAKYPAA FGNYGISSTK MEQPTLHGAV KMAERNLNGV  1560
PGFPTNASGN NGVAAADYQV YRNRDVQPFT IEMKQRQEAF SEMQRKNGFD VVSGVQQQAR  1620
GVLVGRGGIL QCTGVSDPVA AIKMHYAKAE QFSGQTASII REDDSWRSKG DVSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein