PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00814.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 238aa MW: 26528.9 Da PI: 9.9013

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.7	3.7e-28	149	234	1	85
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aC aCk+lrrkC+ d ++apyf +e+ p+kfa++ k+FG++nv+kll+++p ++ da+ + +yeA+a+++dP yG+v+ i++lqq PHU00814.1 149 ACGACKFLRRKCVVDSIFAPYFNSEEgPSKFAAIYKVFGVNNVSKLLHNVPVDDLCDAVVTTAYEAQAKIKDPAYGCVANIFSLQQ 234 7*******************998889******************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MKGVKRFGKK GKLSSRYVGP FWILSRFGKV AYEIKFPSDL ASVHQYPMPS PSQKPILSPS 60 LEPMSILPRE PMPSLPMASL SVIDHMDIDD RCFLDSKMRY FSHVNRFRQF SPQVLRHNLG 120 VQILSRVYRQ GCLRVQLASS SSTGGTGSAC GACKFLRRKC VVDSIFAPYF NSEEGPSKFA 180 AIYKVFGVNN VSKLLHNVPV DDLCDAVVTT AYEAQAKIKD PAYGCVANIF SLQQLVLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	6e-38	LBD family protein