PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU01092.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26418.6 Da    PI: 9.727
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU01092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.5e-222577151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51
                kri++k  rqv f+kRr+g++KKA+ELS+LC+++v v+i+s++  g+l+eyss
  PHU01092.1 25 KRIQDKNCRQVAFCKRRQGLIKKANELSILCNVDVGVVIISNNgtGRLHEYSS 77
                79***************************************972257****96 PP
2K-box36.91.5e-131121792996
       K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                 e Lq+  R+l   + + L++ +L +L+++L++sl++iRskK++l+le +++l +kek+l+ee+k L++
  PHU01092.1 112 ELLQTAERQLEETNADGLTVTDLIHLQNELQTSLTQIRSKKTQLMLETVKDLLEKEKQLREEKKLLKN 179
                 7899999*********************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
METCGNIGLG LKKKKEMGRR KLEIKRIQDK NCRQVAFCKR RQGLIKKANE LSILCNVDVG  60
VVIISNNGTG RLHEYSSTNS VTGILQRYES HVQAEKEISG EHSMYSSMKI GELLQTAERQ  120
LEETNADGLT VTDLIHLQNE LQTSLTQIRS KKTQLMLETV KDLLEKEKQL REEKKLLKNN  180
RARMKKKKEE VNGMSDLPPE GDPEFSQVIL HAYLPCRGSR ITCKLRTYGS CI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189RMKKKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.11e-36MIKC_MADS family protein