PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU01093.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 195aa MW: 22442.7 Da PI: 9.1258

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU01093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.2	3.9e-22	9	61	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeyss 51 krie+k+ rqv fskRr+g++KKA+ LS+LCd++v v+i+s++g+ l+eyss PHU01093.1 9 KRIEDKRCRQVAFSKRRKGLIKKANALSILCDVDVGVVIISNDGTarLHEYSS 61 79*****************************************9544999986 PP
2	K-box	34.6	8.3e-13	99	170	27	99
K-box 27 eienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e Lq++ R+l e+++ +L + +L +Le++L+ +l +iRs++++llle+++ l +kek l+eenk L+ +++ PHU01093.1 99 TRELLQETERQL--EKINaDLAVTDLIHLENELQAALIQIRSRQTNLLLESVKGLHEKEKLLREENKHLEDNIA 170 457899998988..777647*************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MGRRKLEIKR IEDKRCRQVA FSKRRKGLIK KANALSILCD VDVGVVIISN DGTARLHEYS 60 STNSVTGILQ RYESHVETEK EISAEIQVTE HSKYSSMATR ELLQETERQL EKINADLAVT 120 DLIHLENELQ AALIQIRSRQ TNLLLESVKG LHEKEKLLRE ENKHLEDNIA TTIKKNRRGN 180 EMSDLQPQRV TLNFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65060.1	4e-32	MIKC_MADS family protein