PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU01627.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 292aa    MW: 34426.8 Da    PI: 7.0696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU01627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-162572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l + ++++G g+W++ ar  g++Rt+k+c++rw++yl
       PHU01627.1 25 RGSWTIEEDFTLMNHIALHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding51.42.5e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       PHU01627.1  78 RGNITLEEQLLILQLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MNHYSQYVDN NQKSDEETNN LDLKRGSWTI EEDFTLMNHI ALHGEGRWNS LARSAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL QLHSRWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DTLHYLWIPR LVERIKASTN SNNNQVNNIQ QTNYDNIISN  180
NNNNNNNNNN IVQNIMNNFK QENYSSTTTT SSENSFGSTQ ISDMSDNCYT NYPLNQGDYH  240
GEILINPTSD YFQHGIIDDN NHQQNMSQLF FDDVSDKFWN QEDMLFLQQQ LN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-78MYB family protein