PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU01923.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 242aa    MW: 26789.4 Da    PI: 6.8739
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU01923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.2e-294106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C l+p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q +q+++e 
  PHU01923.1   4 SCNGCRVLRKGCSETCSLRPCLqwirsPESQANATVFLAKFYGRAGLINLINAGPHHLRPAIFKSLLYEACGRIINPVNGSVGLMCSGNWQRCQEAVES 102
                 6***********************************************************************************************998 PP

      DUF260  95 allk 98 
                 +l +
  PHU01923.1 103 VLNG 106
                 8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MRMSCNGCRV LRKGCSETCS LRPCLQWIRS PESQANATVF LAKFYGRAGL INLINAGPHH  60
LRPAIFKSLL YEACGRIINP VNGSVGLMCS GNWQRCQEAV ESVLNGSTIV QVPINDESNN  120
NNNTDQIVPL KSCDIRHIAK NSSNTEQVIR TRNGRFKRKA SNSVAEEAAE EYLMTNEPPS  180
KFSITGWDQL NEMDELKRAP SHDSFSVETV EPTLLVNRVD PVKLEENGDV GLELTLGLMS  240
PV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.14e-72LBD family protein