PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU01939.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 287aa    MW: 33484.1 Da    PI: 5.9238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU01939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++++  +G g+W++ a++ g++Rt+k+c++rw++yl
       PHU01939.1 22 RGPWTLEEDNLLIHYISTHGEGRWNALAKCAGLKRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding52.79.5e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       PHU01939.1  75 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MSSNNNNNNL SSNEDELFEL RRGPWTLEED NLLIHYISTH GEGRWNALAK CAGLKRTGKS  60
CRLRWLNYLK PDIKRGNLTP QEQLLILELH SKWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
QKQARQLKVD SNSKKFVEAI KNLWVPRLLE KMEQCSSSST IDKKQNINNL SFPNLPLINN  180
QESCTKDNKS SHDDDNTNTN SNNNTTWGSL GSSMNENFNI CNNSMHQDDE CYYVENNFNQ  240
QPQHFSYQEM SISECDEVAE ADWFTNEGSL WNMDELWQFK KLGDVDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-85MYB family protein