PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02106.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 242aa MW: 27486.9 Da PI: 10.1987

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.7	6e-40	37	145	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssaseceaess 78 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikelt++ s +++++c+++++ PHU02106.1 37 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELTRSiplennedhrkmrkiesrdrprSEKPNKKCNQDQE 135 79**************************************************************88876666666666655555555555555544444 PP TCP 79 sssasnsssg 88 +++ +s++ PHU02106.1 136 LDETNPKSID 145 4444433333 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGDQSSNPDI SRKNPTEPAM ATSSKKRKLS AKPRRRTGKK DRHSKICTAQ GVRDRRMRLS 60 LQIARKFFDL QDMLGFDKAS KTIEWLFSKS KNAIKELTRS IPLENNEDHR KMRKIESRDR 120 PRSEKPNKKC NQDQELDETN PKSIDKLGSN SSKSYLENQF ANVGIMEKYL GGASCSSITS 180 IFDYDNNGVI KGGIDNISDN YCFNNMGFLE NCTITNEVQI PFAAGNNNPS SINLNNSRFQ 240 QF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	36	KKRKLSAKPRRR
2	26	37	KKRKLSAKPRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	4e-33	TCP family protein