PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02224.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

YABBY

Protein Properties

Length: 163aa MW: 18649.4 Da PI: 9.7697

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	21.8	5.5e-07	4	24	3	23
YABBY 3 vfssseqvCyvqCnfCntila 23 v+ss +++Cyv+CnfC+t+la PHU02224.1 4 VQSSEQHLCYVRCNFCSTVLA 24 5678889************97 PP
2	YABBY	45	4e-14	70	163	24	134
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekr 122 v +P++ l+ +vtv+CGhC++l ++ + q++ + + +l+ +++k + ++++sas s+sse l + p+++ v++PPek+ PHU02224.1 70 VGIPYKRLMDTVTVKCGHCSNLSFLSTRPPIQAQCFDH----------QPTLQGYCNEFKNKGQASSSAS-STSSEPL------SPPHAHFVVKPPEKK 151 899***************986655555444433322..........2233333344443333333332.3333343......456677789** PP YABBY 123 qrvPsaynrfik 134 r Psaynrf+k PHU02224.1 152 HRLPSAYNRFMK 163 ********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence
MDYVQSSEQH LCYVRCNFCS TVLAEFRYGR NTVDRYERVY FTEGNLVAVP VPFNRTALKV 60 AIRQRVPWKV GIPYKRLMDT VTVKCGHCSN LSFLSTRPPI QAQCFDHQPT LQGYCNEFKN 120 KGQASSSASS TSSEPLSPPH AHFVVKPPEK KHRLPSAYNR FMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	8e-26	YABBY family protein