PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02484.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 182aa MW: 21074.3 Da PI: 10.6512

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ ++++G g+W++ +++ g+ R++k+c++rw +yl PHU02484.1 14 KGPWTHDEDQKLLSFIEKHGCGSWRSLPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.3	4.8e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ +++++++lG++ W++Ia +++ +Rt++++k++w++ PHU02484.1 67 RGKFSLQEERSIIHLHALLGNR-WSAIATYLP-RRTDNEIKNYWNS 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MGRSKCCDKE GLKKGPWTHD EDQKLLSFIE KHGCGSWRSL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEERSIIH LHALLGNRWS AIATYLPRRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPKI TNNLNGVASS KYVANLSHMA EWESARLEAE ARLVQKSKDS KILFNNNKCQ 180 QH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-95	MYB family protein