PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02508.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 419aa MW: 46566.6 Da PI: 7.8

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6e-16	112	157	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ PHU02508.1 112 RGHWRPAEDAQLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 157 899***************************.*********996 PP
2	Myb_DNA-binding	54.8	2.2e-17	164	207	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PHU02508.1 164 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 207 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MGGASTSMGM FFADMNSLSI NTPKSVDEGK GRKGSWDFQF LNKGGAVFSC CQNLDEVQNS 60 EENNESIDLN ASCYNEEKQI TLHSTFNSNN SSSGGGNNGK ETESGQSKLC ARGHWRPAED 120 AQLKELVAIY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFSEE EEERLMAAHR 180 LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY RRRKMGQFVY RRSTLVVEEA 240 DSGKAQAPII SCQNSVNQFG ATANTSVKIN NDGPNEAAAA TPSSTNNVTL LSPYSPFCAP 300 PFDSLPAGHC GNEMMNILNQ QGNKSWDRKM EITHHQHHHP TPPSNSLMMM NSMQQQSQYL 360 QFPYVTTSRT QISSSPSAAQ AEVLVKEEDR RSSSSNNNNN SDNSTIAPPF IDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MGGASTSMGM FFADMNSLSI NTPKSVDEGK GRKGSWDFQF LNKGGAVFSC CQNLDEVQNS  60
EENNESIDLN ASCYNEEKQI TLHSTFNSNN SSSGGGNNGK ETESGQSKLC ARGHWRPAED  120
AQLKELVAIY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFSEE EEERLMAAHR  180
LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY RRRKMGQFVY RRSTLVVEEA  240
DSGKAQAPII SCQNSVNQFG ATANTSVKIN NDGPNEAAAA TPSSTNNVTL LSPYSPFCAP  300
PFDSLPAGHC GNEMMNILNQ QGNKSWDRKM EITHHQHHHP TPPSNSLMMM NSMQQQSQYL  360
QFPYVTTSRT QISSSPSAAQ AEVLVKEEDR RSSSSNNNNN SDNSTIAPPF IDFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26780.1	5e-76	MYB family protein