PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU02645.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Whirly
Protein Properties Length: 198aa    MW: 21641.8 Da    PI: 5.2577
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU02645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly185.21.1e-57312022139
      Whirly  22 dsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgne 120
                 +sg++kl+r+G ++l++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+eG+vrk+lkvePlpdGsG+f+nlsv+n+l++ +e
  PHU02645.1   3 QSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDE 101
                 69************************************************************************************************* PP

      Whirly 121 sfsvPvskaefavlrsllv 139
                 ++++Pv+kaefavl s+++
  PHU02645.1 102 NIYIPVTKAEFAVLVSAFN 120
                 ***************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MEQSGAFKLS REGMVMLQFA PAAGVRQYDW SRKQVFSLSV TEIGSIISLG AKDSCEFFHD  60
PNKGRSDEGR VRKVLKVEPL PDGSGHFFNL SVQNKLINLD ENIYIPVTKA EFAVLVSAFN  120
VGTLLQIPSS LKIPVAQTML IQDQVPNLNG IDSSDELDYV ACAMIGGQDA LLALGSTFCT  180
SLFDLCPPAI LQRSSNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.12e-71Whirly family protein