PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03387.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 223aa    MW: 24489.8 Da    PI: 6.9826
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.57.5e-322101195
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA  r+ +Pv+Gavg++++++++++q+++e+
  PHU03387.1   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6**********************************************************************************************9987 PP

      DUF260  95 a 95 
                  
  PHU03387.1 101 I 101
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET ILRGGALRPI SEFLGASLEI  120
DEVSECNNTF KLQDPSVNML QQKRRRSPEE TSMLTDLNLS LTAGFNQQVY NNSHTLPEKH  180
VRPGTPSMNS EESGTTSTCF QSVGVVIGDH YQGKEPKLLS LFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-80LBD family protein