PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03402.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19096.7 Da    PI: 9.0263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-17242444
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +n+ n + tfskRr g++KK +ELS+LC++e+a ++fs++ 
  PHU03402.1  2 KNQNNISATFSKRRDGLFKKVSELSTLCGVEIATVVFSPSK 42
                7999**********************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MKNQNNISAT FSKRRDGLFK KVSELSTLCG VEIATVVFSP SKTSVYSIGH PCVLSVVDKF  60
LNPPPDTDSP QPLAKPYQNK DVTKMEKLIE AEEKRALRLQ STNTKGSYEG LNYFQLQELS  120
DILEAKLKMT ERVEIQQKES GIPFSFKSYG YALAPRENIL STSDVGPSRS N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-23M-type_MADS family protein