PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03539.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 179aa    MW: 20130.8 Da    PI: 9.3
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2343.6e-72111734170
       YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
                  s se+vCy+qCnfCntilavsvP +s+ ++vtvrCGhC++llsvn+    q+l+ ++ l++  +++ ++ ++++ +n+k +v++++s+s+     ++s
  PHU03539.1  11 SSFSERVCYLQCNFCNTILAVSVPCSSMQTIVTVRCGHCANLLSVNIGSLLQALPFQD-LQKLQRQQYTNVEHNNASNYKGYVSSSSSSSK---FDRFS 105
                 6789****************************************************99.56655555554444555555555544444443...34456 PP

       YABBY 103 enedeev.prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  + + e+ pr+pp irPPekrqrvPsayn+fikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl
  PHU03539.1 106 ASISPEIePRIPP-IRPPEKRQRVPSAYNKFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 173
                 6666555266666.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MAFDMTSSST SSFSERVCYL QCNFCNTILA VSVPCSSMQT IVTVRCGHCA NLLSVNIGSL  60
LQALPFQDLQ KLQRQQYTNV EHNNASNYKG YVSSSSSSSK FDRFSASISP EIEPRIPPIR  120
PPEKRQRVPS AYNKFIKEEI QRIKASNPDI THREAFSTAA KNWAHFPHIH FGLKLEGNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.11e-56YABBY family protein