PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03848.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 489aa MW: 54215.7 Da PI: 9.457

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	76	96	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H PHU03848.1 76 CEICNKGFQRDQNLQLHRRGH 96 *******************88 PP
2	zf-C2H2	11.9	0.0007	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + PHU03848.1 151 WKCEKCSKKYAVQSDWKAHNKIC 173 58*****************8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MMSNDELSCS IRGGFTFIQD PKNPSSNISH NPNPNPNPTA SSANKRKRNL PGNPDPDAEV 60 IALSPKSLMA TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEL IKKKVYICPE 120 SSCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHN KICGTREYKC 180 DCGTLFSRKD SFITHRAFCD TLAEETARFT SVPTSTNLNN LRNQLLNGGI NTNLQQQMSG 240 NISQFGSLFR PELMGSLDPS SHHHQLNLDG QQSRLPLWLH HDNANSGNPN DFLSTQSSTP 300 TTTLPHELVQ MAPHTNMLDM SSTQNGNNNN NQWFINTNGA AATSSSSMPR VLKEEEDINN 360 KSTSPMYCNN SHMSATALLQ KAAQIGSTRS NNNSSLFSTQ FGLMASSSLS NLNSLANIDN 420 IEGNVAANAT SLVDKNANTL MMMPNNKGKQ VNIEGSLTRD FLGVGGNEKR PFLQQSHELA 480 KFGNNTGIF

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MMSNDELSCS IRGGFTFIQD PKNPSSNISH NPNPNPNPTA SSANKRKRNL PGNPDPDAEV  60
IALSPKSLMA TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEL IKKKVYICPE  120
SSCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHN KICGTREYKC  180
DCGTLFSRKD SFITHRAFCD TLAEETARFT SVPTSTNLNN LRNQLLNGGI NTNLQQQMSG  240
NISQFGSLFR PELMGSLDPS SHHHQLNLDG QQSRLPLWLH HDNANSGNPN DFLSTQSSTP  300
TTTLPHELVQ MAPHTNMLDM SSTQNGNNNN NQWFINTNGA AATSSSSMPR VLKEEEDINN  360
KSTSPMYCNN SHMSATALLQ KAAQIGSTRS NNNSSLFSTQ FGLMASSSLS NLNSLANIDN  420
IEGNVAANAT SLVDKNANTL MMMPNNKGKQ VNIEGSLTRD FLGVGGNEKR PFLQQSHELA  480
KFGNNTGIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-103	C2H2 family protein