PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03868.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91900.8 Da    PI: 6.1506
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182583357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PHU03868.1 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                56789****************************************************97 PP
2START154.31e-481643712204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv ++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++ +e+    s g  g+++l +++ 
  PHU03868.1 164 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNVEVFTMFSAGngGTIELLYTQI 261
                 7899******************************************************.7777777777****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l  g++v++++S++ +   p+    s++vRa++lpSg+li+p+++g+s +++v+h +l++++ +++lr+l++s+ + ++
  PHU03868.1 262 YAPTTLAPaRDFWTLRYTTTLDTGSLVVCERSLSGTGAGPNaaaASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYESSKVVAQ 360
                 **************************************9999999****************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  PHU03868.1 361 KMTIAALRYAR 371
                 *******9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MAMVAQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ NASAATTDVS CESVVTTPQH SLRDASNPAG LLSIAEETLA EFLSKATGTA  180
VDWVPMPGMK PGPDSVGIFA ISHSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV  240
EVFTMFSAGN GGTIELLYTQ IYAPTTLAPA RDFWTLRYTT TLDTGSLVVC ERSLSGTGAG  300
PNAAAASQFV RAQMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSAPEILRP LYESSKVVAQ  360
KMTIAALRYA RQLAQETSGE VVYGLGRQPA VLRTFSQRLC RGFNDAINGF SDDGWSMLSS  420
DGSEDVIVAV NSRKNLATTS VPLSPPGGIL CAKASMLLQN VPPAVLVRFL REHRSEWADF  480
NVDAYVASSL KSCPYSYPGM RPTRFTGSQI IMPLGHTIEH EEMLEVIRLE GHSIGQEDAF  540
MPRDIHLLQM CSGTDENAVG ACSELVFAPI DEMFPDDAPL LPSGFRIIPL ESKSSDSHDT  600
LNTHRTLDLA SSLEVGAATN PATGDAASCA RSVLTIAFQF PFEDNLQENV ATMARQYVRS  660
VVSSVQRVAM AISPSGVNPT LGSKLSPASP EAVTLSHWIC QSYSYHMGTE LLRADSSGDE  720
SVLKNLWQHQ DAILCCSLKS LPVFIFANKA GLDMLETTLV ALQDISLDKI FDESGRKVLF  780
AEFPKIMEQG FACLPGGICM SAMGRHISYE QAIAWKVFAS SEENAVHCLA FSFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein