PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03973.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 995aa MW: 109857 Da PI: 4.8059

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	1e-18	45	89	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l PHU03973.1 45 KWTPEEDEILRQAVQQFKGKSWKKIAECFK-DRTDVQCLHRWQKVL 89 8**************************9.**********986 PP
2	Myb_DNA-binding	55.4	1.4e-17	95	141	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++v+ +G+ W+ Ia+++ gR +kqc++rw+++l PHU03973.1 95 KGSWSKEEDDKLIQLVNIHGPQKWSNIAQELA-GRIGKQCRERWHNHL 141 799***************************.***********97 PP
3	Myb_DNA-binding	54.5	2.7e-17	147	189	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ lv+a++ +G++ W+ I+++++ gR+++ +k++w+ PHU03973.1 147 KEAWTEEEELTLVRAHQAYGNK-WAEISKYLP-GRSDNAIKNHWH 189 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence
MLDYQDLSLS QATMESDETS KPPSDDISSR PLHGRTSGPK RRSVKWTPEE DEILRQAVQQ 60 FKGKSWKKIA ECFKDRTDVQ CLHRWQKVLD PELVKGSWSK EEDDKLIQLV NIHGPQKWSN 120 IAQELAGRIG KQCRERWHNH LNPEIKKEAW TEEEELTLVR AHQAYGNKWA EISKYLPGRS 180 DNAIKNHWHS SVKKKLASGL LAQSPALPNV NHQNQSIASS SMKLQETSED ESVHKEGAEV 240 EEVTECSQGS TLAGCPQSTS DLGNTFMHIR ENDAMLEESI HKKDASSGAA PCPRNSASAF 300 QDVSCSMLNV PSDLVDSKFL EYMFSHDGDN STERDWQFNM DDFPGFIEEF SGHYMHCSND 360 NENHAMVADP LQTAMGSGAT SNAANMVEGP YKPNEMFDGC RIVYPEAAIS QCSPSETGVN 420 GTGEPADCLI YQSSNYQIPE EGNMAPTNCN ALSFDDVEAS THQQFSVPSH FSSEDRSLVF 480 GIASDQFHYP PLENSVLESF TSRCDDFICP SEFGSPSNDN GIDNAVLKDL PDHTKDSSRL 540 EEQKDGGALC YEPPRFPSLD VPFLYCDLIQ SGSNTQQEYS PLGIRHLMMS PANCLTPLRL 600 WNSPSGDDSP NAILKSAAKT FTGTPSIVKK RQRHLVSPLS EKRCEKKLES YLNQESFSNM 660 ATEISRVGDM FNESANEKAS TEDKENLHPS SEDGRKEQGD GVTGLSCIEN SERQLDGGGA 720 HYHKDPNSES AGANDTLGKV KQPPGVLVER SSSDMLVSPD RFLIKCDRAT SLSNKALDNQ 780 YAGQLEAASN QVNVSSSFET SFLSVFCSPD ILGKCRSSVV KATSMQSTTS TALVNTAENS 840 EKGFGAETSN IFGEAPLKRS TESPSAWKSP WSLNSFLPSP RYDTELTFED FAPFMSPGER 900 SYDAIGLMRQ LSEQTAPSIA DARQILGSET PETILSKRTK QQKADEDCAL LASNAMSERR 960 TLDFSECVTP PRKGKETTKF GSVSSPSSYL LKCCR

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence

MLDYQDLSLS QATMESDETS KPPSDDISSR PLHGRTSGPK RRSVKWTPEE DEILRQAVQQ  60
FKGKSWKKIA ECFKDRTDVQ CLHRWQKVLD PELVKGSWSK EEDDKLIQLV NIHGPQKWSN  120
IAQELAGRIG KQCRERWHNH LNPEIKKEAW TEEEELTLVR AHQAYGNKWA EISKYLPGRS  180
DNAIKNHWHS SVKKKLASGL LAQSPALPNV NHQNQSIASS SMKLQETSED ESVHKEGAEV  240
EEVTECSQGS TLAGCPQSTS DLGNTFMHIR ENDAMLEESI HKKDASSGAA PCPRNSASAF  300
QDVSCSMLNV PSDLVDSKFL EYMFSHDGDN STERDWQFNM DDFPGFIEEF SGHYMHCSND  360
NENHAMVADP LQTAMGSGAT SNAANMVEGP YKPNEMFDGC RIVYPEAAIS QCSPSETGVN  420
GTGEPADCLI YQSSNYQIPE EGNMAPTNCN ALSFDDVEAS THQQFSVPSH FSSEDRSLVF  480
GIASDQFHYP PLENSVLESF TSRCDDFICP SEFGSPSNDN GIDNAVLKDL PDHTKDSSRL  540
EEQKDGGALC YEPPRFPSLD VPFLYCDLIQ SGSNTQQEYS PLGIRHLMMS PANCLTPLRL  600
WNSPSGDDSP NAILKSAAKT FTGTPSIVKK RQRHLVSPLS EKRCEKKLES YLNQESFSNM  660
ATEISRVGDM FNESANEKAS TEDKENLHPS SEDGRKEQGD GVTGLSCIEN SERQLDGGGA  720
HYHKDPNSES AGANDTLGKV KQPPGVLVER SSSDMLVSPD RFLIKCDRAT SLSNKALDNQ  780
YAGQLEAASN QVNVSSSFET SFLSVFCSPD ILGKCRSSVV KATSMQSTTS TALVNTAENS  840
EKGFGAETSN IFGEAPLKRS TESPSAWKSP WSLNSFLPSP RYDTELTFED FAPFMSPGER  900
SYDAIGLMRQ LSEQTAPSIA DARQILGSET PETILSKRTK QQKADEDCAL LASNAMSERR  960
TLDFSECVTP PRKGKETTKF GSVSSPSSYL LKCCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	1e-178	MYB family protein