PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU04052.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 25298.4 Da    PI: 9.8614
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU04052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.9e-1121511443
                HHHH.HHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF 14 skRr.ngilKKAeELSvLCdaevaviifsst 43
                 +R+ +g++KK eE S+LC++++a+iifs++
  PHU04052.1 21 LNRKtKGLFKKVEEFSILCGVDAAIIIFSPE 51
                567647***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MARKRLGLTR NRRENVRDSI LNRKTKGLFK KVEEFSILCG VDAAIIIFSP EENQPIVWKS  60
TNQAKELLMR YFSFPTFERI KKLVIHEMYL SKKVDEMKEK VDKIEKMNEE KEIKLLFRQL  120
VEGKNITEFD SRDIKGLLKL FTTTMDKIKE RKEQFILQQQ PSQPPNSPSN FKLAEENVTQ  180
SPCPMKDLIN DQWFVETMSS NQYYFGLVGG SCTKSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.29e-18M-type_MADS family protein