PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU04426.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 321aa    MW: 36470.8 Da    PI: 7.7364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU04426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.1e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd++l+d+++++G+g+W+t ++  g+ R++k+c++rw +yl
       PHU04426.1 14 KGPWTTEEDQRLIDYIQKHGSGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.35.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+e +++++  lG++ W++Ia +++ gRt++++k++w++
       PHU04426.1  67 RGKFSFEEEETIIHLHSILGNK-WSAIAGRLP-GRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRTPCCDKN GLKKGPWTTE EDQRLIDYIQ KHGSGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SFEEEETIIH LHSILGNKWS AIAGRLPGRT DNEIKNYWNT RIRKKLMRMG  120
IDPVTHSPRL DLLDLNSIFN PSIYNSCQVI NNNLSRLLGV QSLVNPELLK LANSLLSSNH  180
QNQNFLLGSN FQENQPFNSH VQNQLTSLCQ ANQIQNPIQN TSTCSDLNIQ SVPFYSDTQV  240
MQQPNVEQLS SNVSTFSSQN SQQNEWKNFT FDSALPNLST PSSSPTSLNS NSSTTSEEER  300
ESYCSMLNFD IPNILDVNEL L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-97MYB family protein