PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05126.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 377aa MW: 42749.4 Da PI: 7.7031

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	161	204	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd ll ++++ +G g W++++ + g++R++k+c++rw PHU05126.1 161 KGAWTEEEDFLLRKCIQNYGEGKWHLVPIRAGLNRCRKSCRLRW 204 79****************************************** PP
2	Myb_DNA-binding	25.8	2.5e-08	203	227	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l PHU05126.1 203 RWSLIAGRLP-GRTANDVKNYWNSHL 227 4*******.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MVKSVMESGE LSCGQSDVVI SHLMNGRGKI YPTFIKNDRH VELHMLCVDS NNSRPILRVK 60 VVRRSLKKAS TSTLPPPPPP VVDDTSMEYD CMSGDEWNNS EDYAEKECGG AEDRQFEPQG 120 SHSFSDGTNL FVGQIFKDKN VYVILNIMNT AIIAKSSGVR KGAWTEEEDF LLRKCIQNYG 180 EGKWHLVPIR AGLNRCRKSC RLRWSLIAGR LPGRTANDVK NYWNSHLQKK LITAPHRQER 240 KYSTALKITK KNVLRPRPRT FSSSAKNNIS WCTNKSTVIT NTLDKDERDK EIGLNICQKL 300 TSETSSTIDD GVHWWTSLLE NCKEIEEDVA AVGIFEEKNK LVPSLLHDEI NSLTMQQGQS 360 DGWDDFSADI DLWNLLN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MVKSVMESGE LSCGQSDVVI SHLMNGRGKI YPTFIKNDRH VELHMLCVDS NNSRPILRVK  60
VVRRSLKKAS TSTLPPPPPP VVDDTSMEYD CMSGDEWNNS EDYAEKECGG AEDRQFEPQG  120
SHSFSDGTNL FVGQIFKDKN VYVILNIMNT AIIAKSSGVR KGAWTEEEDF LLRKCIQNYG  180
EGKWHLVPIR AGLNRCRKSC RLRWSLIAGR LPGRTANDVK NYWNSHLQKK LITAPHRQER  240
KYSTALKITK KNVLRPRPRT FSSSAKNNIS WCTNKSTVIT NTLDKDERDK EIGLNICQKL  300
TSETSSTIDD GVHWWTSLLE NCKEIEEDVA AVGIFEEKNK LVPSLLHDEI NSLTMQQGQS  360
DGWDDFSADI DLWNLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56650.1	2e-39	MYB family protein