PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU05217.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 141aa    MW: 16295.8 Da    PI: 10.506
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU05217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqv+fskRr g+lKKA+ELS+LCdaeva+++fs++gk y ++s
  PHU05217.1  9 KRIENQTNRQVSFSKRRSGLLKKAYELSILCDAEVALLLFSPSGKAYQFAS 59
                79**********************************************986 PP
2K-box49.22.3e-1781141969
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 +  + +e ++++++ +++ i++L+   +hl GedL+sL +keL+qLe+qL  + ++iRskK
  PHU05217.1  81 QGLRAMEVWKTKINDMRRTIDELEVRDKHLAGEDLSSLGMKELKQLERQLRIGAERIRSKK 141
                 66677899****************999*********************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MGRGKVELKR IENQTNRQVS FSKRRSGLLK KAYELSILCD AEVALLLFSP SGKAYQFASH  60
DMERTILRYK NEVGLSNNSD QGLRAMEVWK TKINDMRRTI DELEVRDKHL AGEDLSSLGM  120
KELKQLERQL RIGAERIRSK K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-44MIKC_MADS family protein