PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05361.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 383aa MW: 43928.4 Da PI: 5.7834

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H PHU05361.1 130 YRCSFCKRGFSNAQALGGHMNIH 152 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MDMPSESFEA EYHRMQYATL LRNYGLQKEK KVSFDHLVVP ISDSCPSVAL SEHPTPIRRV 60 KYKVNEFFEN YKSRLILWGD TQVEVPLFTS VIVLSINPME MIDPSNSEDS NKILTWRSEE 120 LLGLGQVKFY RCSFCKRGFS NAQALGGHMN IHRRDRAKLR EFSSDQNLLS LDINNSIYPP 180 PLLANDDLLQ RDVSSPYDEA IICSSSKRRC VTYEDQKDHP TSKVNYDHNP PHPPPAHNVS 240 LQREVSSYDK TIICSPSKKP CVAYEDIDHP TYKVNYDYNP LPHRPPSNDE SFQREVSSYD 300 ETIISSSSKR PCVTYDEESD HNRAVIIGDL LQLSLFKETP LIKEARNRME GQVENKGIQL 360 SPPSELDLEL RLGMEQPKSS IEI

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MDMPSESFEA EYHRMQYATL LRNYGLQKEK KVSFDHLVVP ISDSCPSVAL SEHPTPIRRV  60
KYKVNEFFEN YKSRLILWGD TQVEVPLFTS VIVLSINPME MIDPSNSEDS NKILTWRSEE  120
LLGLGQVKFY RCSFCKRGFS NAQALGGHMN IHRRDRAKLR EFSSDQNLLS LDINNSIYPP  180
PLLANDDLLQ RDVSSPYDEA IICSSSKRRC VTYEDQKDHP TSKVNYDHNP PHPPPAHNVS  240
LQREVSSYDK TIICSPSKKP CVAYEDIDHP TYKVNYDYNP LPHRPPSNDE SFQREVSSYD  300
ETIISSSSKR PCVTYDEESD HNRAVIIGDL LQLSLFKETP LIKEARNRME GQVENKGIQL  360
SPPSELDLEL RLGMEQPKSS IEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	6e-15	C2H2 family protein