PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05496.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 480aa MW: 53314.9 Da PI: 9.5296

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PHU05496.1 65 FICEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12.8	0.00035	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ PHU05496.1 142 WKCEKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MMSGDVFSFP SSVKAVLPHH QELQTNPNPK PNPSTKKRRN LPGTPDPDAE VIALSPKSLM 60 ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKLE QVKKKVYICP EKTCIHHDPS 120 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 180 DSFITHRAFC DALAEESSRI TSVGANNLIN FPNNATLLNQ QTNLHGGFTG FRPDYGYPQQ 240 QKPRLSLWLD QQAPNHNNHL QISSSSNLFD SSNTTGFQEM IQMQSQNHVF GGSNSTTSNF 300 SLSSPVQGNS IADQSLNSLY SDSQNSHQLT KANSTPLPMS ATALLQKAAQ MGSTKSNPTT 360 TFFTNNFNKL NSSSSSSSPT TPTFIGLQSI DQATDQLFTQ KSEDYTTSLL QCNNGLMQSV 420 GMQNNPAISM NMEQGINGLA NCLTRDFLGI KHEGNCQFLP QEIVKFASLS NSAMGLSHLQ

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MMSGDVFSFP SSVKAVLPHH QELQTNPNPK PNPSTKKRRN LPGTPDPDAE VIALSPKSLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKLE QVKKKVYICP EKTCIHHDPS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESSRI TSVGANNLIN FPNNATLLNQ QTNLHGGFTG FRPDYGYPQQ  240
QKPRLSLWLD QQAPNHNNHL QISSSSNLFD SSNTTGFQEM IQMQSQNHVF GGSNSTTSNF  300
SLSSPVQGNS IADQSLNSLY SDSQNSHQLT KANSTPLPMS ATALLQKAAQ MGSTKSNPTT  360
TFFTNNFNKL NSSSSSSSPT TPTFIGLQSI DQATDQLFTQ KSEDYTTSLL QCNNGLMQSV  420
GMQNNPAISM NMEQGINGLA NCLTRDFLGI KHEGNCQFLP QEIVKFASLS NSAMGLSHLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-97	C2H2 family protein