PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05511.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 206aa MW: 23919.5 Da PI: 5.9642

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l+ v+ G ++W++ a+ g++R++k+c++rw++yl PHU05511.1 11 RGQWLEEEDERLAMIVAISGERRWDALAKDSGLKRSGKSCRLRWLNYL 58 899*******************************************97 PP
2	Myb_DNA-binding	50.9	3.6e-16	67	109	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l PHU05511.1 67 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 109 59***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
QLTMQEEELR RGQWLEEEDE RLAMIVAISG ERRWDALAKD SGLKRSGKSC RLRWLNYLHP 60 NLKHGHITAD EERLIIRLQK QFGNKWSKIA KQLPGRTDNE IKNYWRSHLR KKAPVYEQEC 120 FEDNTSNSEQ KSSISNCATV LNSSNSDDSF SEKGDCYSAD SLANEVTLLD GIPSWSYEQS 180 RMEHHMYFCS SNLCSCYAPW TSEDNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	3e-52	MYB family protein