PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05712.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 352aa MW: 40147.2 Da PI: 7.6632

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	79	126	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl PHU05712.1 79 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 126 79********************************************97 PP
2	Myb_DNA-binding	45.6	1.6e-14	132	177	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PHU05712.1 132 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 177 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MNELIKNHLL LLFLSSNHLP LFKHLSICAS SFSFQLSIHT SKTLHTKTTT TTTTPPPPXX 60 XXKQTMGRPP CCDKIGIKKG PWTPEEDIIL VSYIQEHGPG NWRSVPTNTG LMRCSKSCRL 120 RWTNYLRPGI KRGNFTPHEE GMIIHLQALL GNKWAAIASY LPQRTDNDIK NYWNTHLKKK 180 LKKLQTELDS HNLAPLLPNN NNNNINYDNH HQFSWQLSVN NNDKQGISSN SSSSSLYASS 240 TENISRLLEG WMRSSPNNPS RRNNIDHDHD DEMLHVAQKN DQDQEIVKST CEENENSWII 300 PKEKSSNCES NGVVVVDHGK TSPPPFTYLE KWLLEENGGQ VEELMELPMI FT

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MNELIKNHLL LLFLSSNHLP LFKHLSICAS SFSFQLSIHT SKTLHTKTTT TTTTPPPPXX  60
XXKQTMGRPP CCDKIGIKKG PWTPEEDIIL VSYIQEHGPG NWRSVPTNTG LMRCSKSCRL  120
RWTNYLRPGI KRGNFTPHEE GMIIHLQALL GNKWAAIASY LPQRTDNDIK NYWNTHLKKK  180
LKKLQTELDS HNLAPLLPNN NNNNINYDNH HQFSWQLSVN NNDKQGISSN SSSSSLYASS  240
TENISRLLEG WMRSSPNNPS RRNNIDHDHD DEMLHVAQKN DQDQEIVKST CEENENSWII  300
PKEKSSNCES NGVVVVDHGK TSPPPFTYLE KWLLEENGGQ VEELMELPMI FT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	4e-89	MYB family protein